The qvm files must be in a folder named "vm" inside the pk3-file. If the pk3 file is in a mod folder. The mod must be loaded. If the pk3 file is in baseoa it must start with a letter after 'p'.
Thanks,
I got it now, I zipped up the entire oax file and the .qvm files were down 3 or 4 dir.
To fix it I just did the same as you would with any mod but only had the vm file by it's self in the PK3 file.